PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.31350s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 219aa    MW: 24208 Da    PI: 8.4642
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.31350s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1072.9e-3336133393
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaesss 79 
                           +kk+++ ++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlqqa+p+i+ +tg+           s      + ++ +  
  Araha.31350s0003.1.p  36 KKKQPNRDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQQAEPSIISATGNgiksigttttdS-----VSqSPLTAD 119
                           79*************************************************************777776542220.....112233333 PP

                   TCP  80 ssasnsssgkaaks 93 
                            ++s++ +g+++++
  Araha.31350s0003.1.p 120 LMVSHNVEGASRTQ 133
                           33333333322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.884195IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-2741142IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
RKQTEVKGFD IVVGDKELKR KKKKKEEEEQ LLDEKKKKQP NRDRHLKVEG RGRRVRLPPL  60
CAARIYQLTK ELGHKSDGET LEWLLQQAEP SIISATGNGI KSIGTTTTDS VSQSPLTADL  120
MVSHNVEGAS RTQMAANETG QTTGGFDLNY GIGFGFNGVS EIGFGNNQTP GLELGLSQDG  180
NVRNLNPQVY QQVGQEQSRV LYHHSHEDQQ QSAEKHGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KRKKKKK
21836KRKKKKKEEEEQLLDEKKK
31925RKKKKKE
42237KKKEEEEQLLDEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.31350s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870658.21e-126transcription factor TCP6
SwissprotQ9FLM61e-108TCP6_ARATH; Transcription factor TCP6
TrEMBLD7MIZ91e-124D7MIZ9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3309__AT5G41030.11e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-104TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]