PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.31379s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 323aa    MW: 35192.6 Da    PI: 9.3983
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.31379s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.6e-3972131362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Araha.31379s0006.1.p  72 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131
                           6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3855127IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVFSSLPVNQ FDSQNWQQQG NQHQLDCVTT DQNPNNYLRQ LSSPPASQAD TSQARVNSMV  60
ERARIAKVPL PEAALNCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV  120
GGGFRRNKRS KSRSKSTVVV STDNNTTTSS LTSRPSYSNP SKFLSYGQIP GFSSNLPILP  180
PLQSLGDYNS SNTGLDFGGI QLSNVISGMS SSGAILDPWR IPSSQQAQQF PFLINTTGLV  240
QSSNALYPSL EGGDGAAQAR NVKAEENDQD RGRDGDGGNN LSRNFLGNIN INSARNDEYT  300
SWGGNSSWTG FSSNNSTGHL SF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.31379s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2214020.0AK221402.1 Arabidopsis thaliana mRNA for zinc finger protein OBP3, complete cds, clone: RAFL25-48-C17.
GenBankBT0330280.0BT033028.1 Arabidopsis thaliana unknown protein (At3g55370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882423.10.0dof zinc finger protein DOF3.6 isoform X3
SwissprotQ9M2U10.0DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV360.0D7LV36_ARALL; Obf-binding protein 3
STRINGfgenesh2_kg.5__1952__AT3G55370.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-161OBF-binding protein 3