PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.31723s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 127aa MW: 14215 Da PI: 4.5783

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.31723s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.1	1.1e-12	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e Araha.31723s0001.1.p 1 LVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAE 40 79**********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.665	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-10	1	38	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
LVFEANARVR DPVYGCVGAI SYLQNQVSQL QMQLAVAQAE ILCIQMQNEP TLQSHHQVLE 60 LDQDHKALLL NNNNINNCNT NNNNNNLGYA MSSGQFNSNF ASPSSIMQMQ MQMQMQDPLK 120 QESLWT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.31723s0001.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB164306	0.0	AB164306.1 Arabidopsis thaliana ASL5 mRNA for ASYMMETRIC LEAVES2-like gene 5 protein, partial cds.
GenBank	AB473838	0.0	AB473838.1 Arabidopsis thaliana ASL5 mRNA for ASYMMETRIC LEAVES2-like 5 protein, complete cds.
GenBank	AC004165	0.0	AC004165.3 Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence.
GenBank	AY086960	0.0	AY086960.1 Arabidopsis thaliana clone 29970 mRNA, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565695.1	6e-86	Lateral organ boundaries (LOB) domain family protein
Swissprot	Q8LBW3	5e-87	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A178VRK1	1e-84	A0A178VRK1_ARATH; PCK1
STRING	AT2G30130.1	2e-85	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-63	LBD family protein

Link Out ? help Back to Top
Phytozome	Araha.31723s0001.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]