PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.31765s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 262aa    MW: 28519.6 Da    PI: 5.653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.31765s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13195240655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Araha.31765s0001.1.p 195 SIAERLRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 240
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16192255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-12193244No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10195240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQSTHISGGS SGGGGGGGGG GGGEVSRSGL SRIRSAPATW IETLLEEEDE EEGLKPNLCL  60
TELLTGNNSG GVITSHEFPS SVEQGLYNYH HHQGGGFHRQ NSSPADFLSG SGVGTDGFFS  120
SFGIPANYDY LSTNVDISPT KRSRDMETQF SSQLKEEQMS GGVSGMMDMN MEKILEDSVP  180
CRVRAKRGCA THPRSIAERL RRTRISDRIR RLQELVPNMD KQTNTADMLE EAVEYVKALQ  240
SQIQELTEQQ KRCKCKPKEE Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.31765s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891184.11e-157transcription factor bHLH80
SwissprotQ9C8P81e-152BH080_ARATH; Transcription factor bHLH80
TrEMBLD7KL861e-156D7KL86_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_103992.11e-157(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-142bHLH family protein