PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3205s0024.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34728.3 Da    PI: 4.5686
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3205s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1861114356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Araha.3205s0024.1.p  61 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 114
                          5568999**********************************************9 PP
2HD-ZIP_I/II128.92e-4160152193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e
  Araha.3205s0024.1.p  60 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQE 149
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Araha.3205s0024.1.p 150 ISK 152
                          976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.90856116IPR001356Homeobox domain
SuperFamilySSF466891.96E-1858118IPR009057Homeodomain-like
SMARTSM003893.4E-1759120IPR001356Homeobox domain
CDDcd000863.33E-1561117No hitNo description
PfamPF000461.4E-1561114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1963123IPR009057Homeodomain-like
PRINTSPR000318.5E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000318.5E-696112IPR000047Helix-turn-helix motif
PfamPF021835.3E-17116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRLSSSDSV GGLISLCPTT STDEQSPRRY GGREFQSMLE GYEEEEEAIV EERGHVGLSE  60
KKRRLSINQV KALEKNFELE NKLEPERKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLEK  120
DYGVLKTQYD SLRHNFDSLR RDNESLLQEI SKLKTKLNGG EEEEENNAAA TTTESDISVK  180
EEEVSLPEKI TEPPSSPPQF LEHSDGLNYR SFTDLRDLLP LKAAASSFAA AAGSSDSSDS  240
SALLNEESSS NVTVAAPVTV PGGNFFQFVK MEQTEDHEDF LSGEEACEFF SDKQPPSLHW  300
YSTVDHWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3205s0024.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605690.0AY060569.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankAY0638190.0AY063819.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-6 (At2g22430) mRNA, complete cds.
GenBankAY0944570.0AY094457.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankAY1229030.0AY122903.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankX670340.0X67034.1 A.thaliana mRNA Athb-6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884255.10.0homeobox-leucine zipper protein ATHB-6
SwissprotP466680.0ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLD7LE050.0D7LE05_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__165__AT2G22430.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-160homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]