PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32090s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 130aa    MW: 14490.5 Da    PI: 8.7624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32090s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05527123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC+ Cgk+F++   L  H  +H
  Araha.32090s0001.1.p  5 FKCETCGKVFKSYQALGGHRASH 27
                          89***********9999999888 PP
2zf-C2H213.70.000185476123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++Cp+C ++F++   L  H r+H
  Araha.32090s0001.1.p 54 HECPICFRVFTSGQALGGHKRSH 76
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.68E-7476No hitNo description
PfamPF139125.4E-12429IPR007087Zinc finger, C2H2
SMARTSM003550.013527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655532IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1825476IPR007087Zinc finger, C2H2
SMARTSM003550.155476IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-115476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
NRGRFKCETC GKVFKSYQAL GGHRASHKKN KACMTKTEQV KTEYIHGVKE KRIHECPICF  60
RVFTSGQALG GHKRSHGSNI GAGRGLSVSQ IVQIDKEEEE GVSVKQRMID LNLPALNEED  120
ETSLVFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32090s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746551e-151AY074655.1 Arabidopsis thaliana At2g45120/T14P1.7 mRNA, complete cds.
GenBankCP0026851e-151CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882791.12e-85zinc finger protein ZAT4
SwissprotQ9SHD01e-80ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLD7LBV64e-84D7LBV6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2705__AT2G45120.16e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-83C2H2-like zinc finger protein