PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32168s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 232aa    MW: 26768.5 Da    PI: 8.194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32168s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3941e-2951150185
                           EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                           f+k+ltpsdv+k++rlv+pkk+a +h                g      e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+
  Araha.32168s0001.1.p  51 FQKELTPSDVGKLNRLVIPKKYAVKHmpfisddqsekeegeiG---GsvEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKE 136
                           99*****************************997666655542...055999************************************* PP

                           HT--TT-EEEEEE- CS
                    B3  72 ngLkegDfvvFkld 85 
                           ++Lke+D++vF+  
  Araha.32168s0001.1.p 137 KNLKEKDVIVFYTC 150
                           ***********943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3345149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-2849150IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-2550148No hitNo description
PfamPF023625.9E-2751151IPR003340B3 DNA binding domain
SMARTSM010194.4E-2351162IPR003340B3 DNA binding domain
PROSITE profilePS5086312.26651173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MIRDGSYPHK FRDFLRVRSQ IVASINIGGT KQVRGEVNQE SDKCFSCTQL FQKELTPSDV  60
GKLNRLVIPK KYAVKHMPFI SDDQSEKEEG EIGGSVEDVE VVFYDRAMRQ WKFRYCYWKS  120
SQSFVFTRGW NSFVKEKNLK EKDVIVFYTC DVPNNVKTLE GQSKTFLMID VHYFSDNGSV  180
VAEEVSMKVH DRSEEVMKTE NFVSSKLKDK DTKTEENKGG FMLFGVRIQC P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-274714710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32168s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.21e-164AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-154RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-163D7KGR6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4154__AT1G50680.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-156RAV family protein