PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32525s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 260aa    MW: 29383.2 Da    PI: 8.3073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32525s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.3e-28137197259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dD ++WrKYGqK++ g+++prsYYrCt++    C+++k+v+rs++dp+++e+tY+g H+++
  Araha.32525s0001.1.p 137 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqYCWATKQVQRSDSDPTIFEVTYRGIHTCS 197
                           8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.115131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-27132197IPR003657WRKY domain
SuperFamilySSF1182902.22E-24135197IPR003657WRKY domain
SMARTSM007741.0E-37136198IPR003657WRKY domain
PfamPF031064.1E-25137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEMMNWEHMN LLNELIHGLK AAKQLQASPS PSSSYLTTAM KETLLHNIVS SFEKAILMLN  60
GSTTQNIPMT ELAPDLLAHP GKVPESPTSI TGSPRSEEFF DVGSKDCNLS SKKRKMLPKW  120
TEQVRISPER GLEGPHDDVF SWRKYGQKDI LGAKYPRSYY RCTFRNTQYC WATKQVQRSD  180
SDPTIFEVTY RGIHTCSQGI PPPAKRETIP NHTVAINYQN NLLDNLRTNL TVRTTNGLEA  240
DTFSFPVTSP FYTYESINGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18137196968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32525s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423960.0AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336860.0AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872545.11e-163probable WRKY transcription factor 41
SwissprotQ8H0Y81e-150WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLD7LYW11e-161D7LYW1_ARALL; WRKY DNA-binding protein 41
STRINGfgenesh2_kg.6__3080__AT4G11070.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-145WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]