PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32924s0003.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 116aa    MW: 13100.6 Da    PI: 8.7447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32924s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-095879526
                          --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          lC++f  + +C++Gd+C++ H+
  Araha.32924s0003.2.p 58 LCNRFITSNFCPFGDSCRYVHP 79
                          8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576674.44E-12451No hitNo description
PfamPF062201.4E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.315381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-75681IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-55879IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-65879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSDLINHQV SNFATKGLCN  60
RFITSNFCPF GDSCRYVHPN NNPGSTDAGL TNNTQLHGDM LNQHIEGSTL NRMRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32924s0003.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007327e-51AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026887e-51CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P167e-51AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874322.13e-69zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-22C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLD7M5C76e-68D7M5C7_ARALL; Uncharacterized protein
STRINGscaffold_602796.11e-68(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.19e-70C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]