PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3367s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 169aa    MW: 18447.4 Da    PI: 9.9464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3367s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000287109123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  Araha.3367s0001.1.p  87 HPCPICGVEFPMGQALGGHMRRH 109
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-737109No hitNo description
PfamPF139128.6E-123863IPR007087Zinc finger, C2H2
SMARTSM0035513961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9953961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.07987109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.69987114IPR007087Zinc finger, C2H2
PfamPF139122.5E-1187110IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVARSEEIVK VEDTAAKCLM LLSRVGECGG YGGGEKRVFR CKTCLKEFSS FQALGGHRAS  60
HKKLINSNDS SLLGFLINKK TKTMTSHPCP ICGVEFPMGQ ALGGHMRRHR NEKASGTLVT  120
RSFLPETTTT MTTLKKSSSG KRVACLDFDL DSMESLVNWK LELGRTIS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3367s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3557751e-177AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026861e-177CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190194.11e-100C2H2-type zinc finger family protein
SwissprotQ9LX851e-101ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLD7LMV22e-93D7LMV2_ARALL; Uncharacterized protein
STRINGAT3G46080.11e-100(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-91C2H2 family protein