PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.33985s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 256aa MW: 28559 Da PI: 8.3036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.33985s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksF + L H+r+H Araha.33985s0005.1.p 5 HKCKLCWKSFANGRALGGHMRSH 27 79********************9 PP
2	zf-C2H2	12.3	0.00051	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H +H Araha.33985s0005.1.p 145 FECETCEKVFKSYQALGGHRASH 167 89***********9999998887 PP
3	zf-C2H2	15.7	4.4e-05	195	217	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+Fs+ L H r+H Araha.33985s0005.1.p 195 HECPICSKVFSSGQALGGHKRSH 217 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.7E-4	4	27	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	5.1E-7	4	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-9	4	27	No hit	No description
PROSITE profile	PS50157	10.512	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-9	140	167	No hit	No description
Pfam	PF13912	1.1E-11	145	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.087	145	167	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.803	145	172	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	147	167	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.92E-5	193	219	No hit	No description
Pfam	PF13912	3.9E-13	194	217	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.45	195	222	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	195	217	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	197	217	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPVPSQPESA SSSMADPLQD RESETESSKK 60 PTRKRSRLNR RSNEEGKSET AGAAEIKIGV QELSESCTEQ EPMSSVSDAA TEEEDVALSL 120 MLLSRDKWEK EDEERGKKKR NNKWFECETC EKVFKSYQAL GGHRASHRKK RAETDQLVSD 180 ELKKKKKKTS TTSHHECPIC SKVFSSGQAL GGHKRSHASA SNNESTIRRS GIIISLIDLN 240 LPAPSEEEDM ASSVF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	187	KKRAETDQLVSDELKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.33985s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	U89959	0.0	U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
GenBank	X98669	0.0	X98669.1 A.thaliana zat1 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868120.1	1e-159	zinc finger protein ZAT1
Swissprot	Q39092	1e-144	ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBL	D7KP50	1e-149	D7KP50_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_1000020	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-138	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Araha.33985s0005.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]