PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.34053s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 184aa MW: 20338.4 Da PI: 9.0228

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.34053s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	45	105	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvP+Ggg+rk k+s+ Araha.34053s0001.1.p 45 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPIGGGCRKAKRSK 105 57899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-35	36	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MQDIHDYSMT GVGGGGGRFF GGGMGGGGGG GDRRMRAHQN NILNHHQSLK CPRCNSLNTK 60 FCYYNNYNLS QPRHFCKNCR RYWTKGGVLR NVPIGGGCRK AKRSKTKQLE GETVQQQQFG 120 DRTAQVEFQG RSSDPNMGFE PLDWGSGGGD QTLFDLTSTV DHAYWSQSQW TSSDQDQNGL 180 YLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	22	GGRFFGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.34053s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	1e-126	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	AK227247	1e-126	AK227247.1 Arabidopsis thaliana mRNA for zinc finger protein OBP4 - like, complete cds, clone: RAFL11-02-A14.
GenBank	AY056413	1e-126	AY056413.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY081709	1e-126	AY081709.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY085856	1e-126	AY085856.1 Arabidopsis thaliana clone 19080 mRNA, complete sequence.
GenBank	CP002688	1e-126	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463728.1	4e-58	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q8LDR0	3e-54	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A0D3DDF4	5e-54	A0A0D3DDF4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E5L9	6e-54	A0A3P6E5L9_BRAOL; Uncharacterized protein
STRING	Bo7g098050.1	9e-55	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-56	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Araha.34053s0001.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]