PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3440s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 163aa MW: 18993.4 Da PI: 9.7935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3440s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.4	9.6e-22	3	78	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ w+fF ++++ky++g+r+ r+tksg+Wk+tg + ++++k ++e++g kk+L+fy +k++k+dWvmhey++ Araha.3440s0003.1.p 3 KSSDEVWHFFGRKENKYNRGDRQMRKTKSGFWKKTGVTINIMRKrgNREKIGEKKVLMFYF---NKSRKSDWVMHEYHA 78 677899***********************************9877888******4...44568******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.861	1	96	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-24	3	96	IPR003441	NAC domain
Pfam	PF02365	2.8E-11	9	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MIKSSDEVWH FFGRKENKYN RGDRQMRKTK SGFWKKTGVT INIMRKRGNR EKIGEKKVLM 60 FYFNKSRKSD WVMHEYHATF SSPNLMTYTL CKVKFKGESR EVSVSSGSGI GLTHSLIPHT 120 NDFGAFSVET EEETQLEDAV RRAINNISTD DWDSLFYDDE QR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3440s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866030.1	1e-108	LOW QUALITY PROTEIN: NAC domain-containing protein 5
Swissprot	O81914	6e-68	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	D7KB65	1e-110	D7KB65_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_1000123	1e-111	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	8e-61	NAC domain containing protein 5

Link Out ? help Back to Top
Phytozome	Araha.3440s0003.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]