PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3440s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 167aa    MW: 19272.5 Da    PI: 6.7175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3440s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.21.2e-3051366127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           F+P +eel+++yL++k+++++  + + i+ev+i+++eP dLp  +k e++  wyf s+ +k   + +r++ra k+g Wk tg+++++++
  Araha.3440s0005.1.p   5 TFNPPEEELINYYLNNKITENDDLVGRQITEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRTKRASKTGHWKITGNSRTIKD 93 
                          7*********************888788***************6444444526777766655.67889********************** PP

                  NAM  95 kkgelvglkktLvfy..........kgrapkgektdWvmheyr 127
                           +g+ +glkk Lvf           + ++ + +kt+W++he++
  Araha.3440s0005.1.p  94 IDGNPIGLKKFLVFQenkrssssssSTTTTQQQKTNWIIHEFH 136
                          ***************666555544435566667*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.8771152IPR003441NAC domain
PfamPF023652.2E-184136IPR003441NAC domain
SuperFamilySSF1019417.85E-345149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MYRCTFNPPE EELINYYLNN KITENDDLVG RQITEVNICH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGKL NRTKRASKTG HWKITGNSRT IKDIDGNPIG LKKFLVFQEN KRSSSSSSST  120
TTTQQQKTNW IIHEFHSFLH HPNKMLTENE NEDYGGDYCN GLDELLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-13613623141NO APICAL MERISTEM PROTEIN
1ut4_B6e-13613623141NO APICAL MERISTEM PROTEIN
1ut7_A6e-13613623141NO APICAL MERISTEM PROTEIN
1ut7_B6e-13613623141NO APICAL MERISTEM PROTEIN
3swm_A5e-13613626144NAC domain-containing protein 19
3swm_B5e-13613626144NAC domain-containing protein 19
3swm_C5e-13613626144NAC domain-containing protein 19
3swm_D5e-13613626144NAC domain-containing protein 19
3swp_A5e-13613626144NAC domain-containing protein 19
3swp_B5e-13613626144NAC domain-containing protein 19
3swp_C5e-13613626144NAC domain-containing protein 19
3swp_D5e-13613626144NAC domain-containing protein 19
4dul_A6e-13613623141NAC domain-containing protein 19
4dul_B6e-13613623141NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3440s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222871e-126AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026861e-126CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889393.11e-122NAC domain-containing protein 69
TrEMBLD7KB611e-121D7KB61_ARALL; Predicted protein
STRINGAl_scaffold_0001_1351e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-104NAC domain containing protein 49