PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.34496s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 227aa    MW: 26512.8 Da    PI: 8.2334
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.34496s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34431352103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y++++d++++e+isw+e+g+ fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg+
  Araha.34496s0002.1.p  43 FLVKTYRVVDDPTTDEVISWNEDGTGFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGQ 122
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           +el+++i+r+ks+
  Araha.34496s0002.1.p 123 RELMSNIRRRKSQ 135
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3640132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDAGEHSRC SDNINDEERL SLEFMIGKST STAELQPPPP PPFLVKTYRV VDDPTTDEVI  60
SWNEDGTGFV VWQPAEFSRD LLPTLFKHCN FSSFVRQLNT YGFRKVTTIR WEFSNEMFRK  120
GQRELMSNIR RRKSQHWSHN KSHYQVVPTT TTVKQEDHQR IGTDHHHEDQ RSSATSSSFV  180
YTALLDENKC LKNENELLSC ELGKTKKKCK QLMELVERYR GLIRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-223713214120Heat shock factor protein 1
5hdg_A3e-22411328110Heat shock factor protein 1
5hdn_A3e-22411328110Heat shock factor protein 1
5hdn_B3e-22411328110Heat shock factor protein 1
5hdn_C3e-22411328110Heat shock factor protein 1
5hdn_D3e-22411328110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.34496s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879948.11e-155heat stress transcription factor B-3
SwissprotO222301e-151HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLD7LHA41e-153D7LHA4_ARALL; AT-HSFB3
STRINGfgenesh1_pm.C_scaffold_40019101e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-149heat shock transcription factor B3