PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3451s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 210aa    MW: 24036.4 Da    PI: 6.8069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3451s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1630119197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk  +ps + ++ ++++p kf++  g+  + +  +tle++ g + ++kl  ++ ++++++ +GW+eF++a+ +keg f++F+++++s+f
  Araha.3451s0004.1.p  30 FFKLVLPSTMKEN-MMRIPPKFVKLQGS--RLPEVVTLETPVGFKRSIKL--KRIGEEIWFHEGWSEFAEAHSIKEGHFLLFEYKDNSSF 114
                          6777766666655.6********66664..48889***************..********************************999999 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            +v +f
  Araha.3451s0004.1.p 115 --RVIIF 119
                          ..77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2425124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2226124IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-1828120No hitNo description
PROSITE profilePS5086313.0729122IPR003340B3 DNA binding domain
SMARTSM010191.2E-1930122IPR003340B3 DNA binding domain
PfamPF023624.6E-1530120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVTTRNTKAR VIPASHRRPP QDPGSPVKTF FKLVLPSTMK ENMMRIPPKF VKLQGSRLPE  60
VVTLETPVGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIKE GHFLLFEYKD NSSFRVIIFN  120
VSACEIEYPL DAVHISDSDD NIIEITGKEF SGTQGTRKND QSVDGGDTEH KSKKRPRDIE  180
FDKILLDVDM INSIQVLKEE EEDMRVYRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3451s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296810.0AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBankBT0061390.0BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBankBT0085410.0BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887460.11e-141B3 domain-containing protein At3g18960
SwissprotQ84R271e-120Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A178VGT71e-117A0A178VGT7_ARATH; Uncharacterized protein
STRINGBostr.19424s0764.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]