PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.34789s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 135aa    MW: 14626.9 Da    PI: 7.8137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.34789s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202070255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  Araha.34789s0007.1.p 20 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 70
                          8********.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.42E-182079No hitNo description
Gene3DG3DSA:3.30.730.103.1E-322080IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-242080IPR016177DNA-binding domain
SMARTSM003803.0E-352084IPR001471AP2/ERF domain
PROSITE profilePS5103223.9472078IPR001471AP2/ERF domain
PfamPF008472.5E-142070IPR001471AP2/ERF domain
PRINTSPR003678.8E-122132IPR001471AP2/ERF domain
PRINTSPR003678.8E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDQGGPSGGG GGGGGAEQGK YRGVRRRPWG KYAAEIRDSR KHGERVWLGT FDTAEDAARA  60
YDRAAYSMRG KAAILNFPHE YNMGTGSSST AASSSSSSRQ VIEFEYLDDS VLDELLEYGE  120
NYNKTHNINT GKRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-5211111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.34789s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3519000.0EU351900.1 Arabidopsis lyrata At1g04370-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305893.17e-63ethylene-responsive transcription factor 14
SwissprotP938225e-63ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLR0GSM32e-61R0GSM3_9BRAS; Uncharacterized protein
STRINGCagra.1671s0052.1.p3e-62(Capsella grandiflora)
STRINGXP_006305893.13e-62(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.19e-54Ethylene-responsive element binding factor 14