PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.34918s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 531aa    MW: 57585.5 Da    PI: 5.6021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.34918s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32142199260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y g Hnh+k
  Araha.34918s0002.1.p 142 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHIIEIIYAGAHNHPK 199
                           8****************************************.***************85 PP
2WRKY96.91.3e-30334391158
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           ldDgy+WrKYGqK+vkg+++prsYYrCt +gC+v+k+ver+++d k v + Y g+H+h
  Araha.34918s0002.1.p 334 LDDGYRWRKYGQKVVKGNQNPRSYYRCTANGCTVTKHVERASDDFKSVLTSYIGKHTH 391
                           59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.248136200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-29137200IPR003657WRKY domain
SuperFamilySSF1182905.62E-26139200IPR003657WRKY domain
SMARTSM007741.4E-35141199IPR003657WRKY domain
PfamPF031065.9E-25142198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-33319394IPR003657WRKY domain
SuperFamilySSF1182908.89E-27326394IPR003657WRKY domain
PROSITE profilePS5081133.132329394IPR003657WRKY domain
SMARTSM007743.9E-34334393IPR003657WRKY domain
PfamPF031062.3E-23335391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
KEDSLQTTFQ ETPSCSRGAL RERIAARSGF NAPSLNTEDI LQSTYLTISS PGLSPATLLE  60
SPVFLSNPLL SPTTGKLSSL PSDKAKEELF DGITTSLAFQ SISGSSLDPT NIALETDNSQ  120
DYEERQLSGG LGDSMASGAP ADDGYNWRKY GQKLVKGSEY PRSYYKCTHP NCEVKKKVER  180
SREGHIIEII YAGAHNHPKP PPNRRSGIGS SGTGQDMQID GTEQEGFAGT NENIEWTSPV  240
SAELEYGSHS GSMQVQSRTQ FGYGDAAANT LFRDEDEDDR TSHMSVSLTY DGEVDESESK  300
RRKLEAYATE VSGSTRASRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NQNPRSYYRC  360
TANGCTVTKH VERASDDFKS VLTSYIGKHT HVVPAARNSS HIGSGSSGTL QGGLATQTHN  420
HNVHYPVPHS RSEGLATANS SLFDFQSHLR PPTGFSAYIG QSELSDLSMP GLTIGQEKLT  480
SLQAPDIGDP AGLMLQLAAE PKVEAVSLQG LDLSPSSLIY REIMSRLPQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29142395878Probable WRKY transcription factor 4
2lex_A1e-29142395878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.34918s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526490.0AY052649.1 Arabidopsis thaliana WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankBT0303610.0BT030361.1 Arabidopsis thaliana At4g26440 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867564.10.0probable WRKY transcription factor 34 isoform X2
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLD7MF960.0D7MF96_ARALL; Microspore-specific promoter 3
STRINGfgenesh1_pm.C_scaffold_70012650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]