PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.35362s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 102aa    MW: 11796.6 Da    PI: 9.7848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.35362s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.6e-12997390
                          EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3  3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                          k+lt +dv  ++rl lpk+ +e++       ++++++++ ++d ++  W v+l     ++ry+++ GWk+  +a +Lk+gD++ ++ ++ +
  Araha.35362s0001.1.p  9 KTLTENDVCYKNRLFLPKDKVENItrstgVPIPRNGIQVEIKDNDNSYW-VNL--GVDGNRYFIGVGWKNLRDARNLKAGDVIKLYWQD-T 95
                          899******************9999998855567889999999666655.888..889999***********************99433.4 PP

                          EE CS
                    B3 89 ef 90
                          +f
  Araha.35362s0001.1.p 96 KF 97
                          44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-11394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14395IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-126101No hitNo description
PROSITE profilePS508639.2637101IPR003340B3 DNA binding domain
SMARTSM010198.4E-67101IPR003340B3 DNA binding domain
PfamPF023628.1E-10998IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPNMMIRKT LTENDVCYKN RLFLPKDKVE NITRSTGVPI PRNGIQVEIK DNDNSYWVNL  60
GVDGNRYFIG VGWKNLRDAR NLKAGDVIKL YWQDTKFIFS I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.35362s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0003816e-48AP000381.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12.
GenBankCP0026866e-48CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289390.12e-49B3 domain-containing protein At1g08985
SwissprotQ8GWU13e-49Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLR0HES14e-48R0HES1_9BRAS; Uncharacterized protein
STRINGBostr.25219s0049.1.p7e-50(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-51B3 family protein