PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3538s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 136aa    MW: 16040.4 Da    PI: 8.8655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3538s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.5e-5361351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+ +yL +kveg ++el evi+ +++yk++Pw+Lp k  + +++ ew+fF++rdkkya+g+r+nratk+gyWkatgk
  Araha.3538s0001.1.p   6 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIELYKFDPWELPdKsFLPNRDLEWFFFCPRDKKYANGSRTNRATKAGYWKATGK 94 
                          79****************************.99**************95434455677******************************** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++k ++  +g +ktLvfy+grap g +t+W+mheyrl
  Araha.3538s0001.1.p  95 DRKITCKsSHVITGYRKTLVFYEGRAPLGDRTNWFMHEYRL 135
                          ******9455558**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-553135IPR003441NAC domain
PROSITE profilePS5100554.5256136IPR003441NAC domain
PfamPF023655.4E-307135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDEELI GYYLSRKVEG LEIELEVIPV IELYKFDPWE LPDKSFLPNR  60
DLEWFFFCPR DKKYANGSRT NRATKAGYWK ATGKDRKITC KSSHVITGYR KTLVFYEGRA  120
PLGDRTNWFM HEYRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-49513616143NO APICAL MERISTEM PROTEIN
1ut4_B4e-49513616143NO APICAL MERISTEM PROTEIN
1ut7_A4e-49513616143NO APICAL MERISTEM PROTEIN
1ut7_B4e-49513616143NO APICAL MERISTEM PROTEIN
3swm_A4e-49513619146NAC domain-containing protein 19
3swm_B4e-49513619146NAC domain-containing protein 19
3swm_C4e-49513619146NAC domain-containing protein 19
3swm_D4e-49513619146NAC domain-containing protein 19
3swp_A4e-49513619146NAC domain-containing protein 19
3swp_B4e-49513619146NAC domain-containing protein 19
3swp_C4e-49513619146NAC domain-containing protein 19
3swp_D4e-49513619146NAC domain-containing protein 19
4dul_A4e-49513616143NAC domain-containing protein 19
4dul_B4e-49513616143NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3538s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0218891e-118AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBankAL1615471e-118AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankCP0026871e-118CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874761.14e-97NAC domain-containing protein 86 isoform X1
SwissprotO496973e-97NAC71_ARATH; NAC domain-containing protein 71
TrEMBLD7MCY78e-96D7MCY7_ARALL; Predicted protein
STRINGAl_scaffold_0007_23951e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.18e-86NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]