PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3539s0015.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 217aa    MW: 24566.7 Da    PI: 10.0154
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3539s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind65.89.7e-21171062100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F + ly++++d++++++isw eng+sf+++d++ef +++Lp++ + s+f  Fv+ L++YgF+kv++++          e++++ F kgk 
  Araha.3539s0015.1.p  17 FPRVLYKVVNDRKTNSVISWGENGKSFIIWDQQEFCRDLLPRVVRISSFPLFVKRLETYGFTKVESDH---------FEYANDDFVKGKP 97 
                          77889*************************************************************99.........67*********** PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          +l  +i+++
  Araha.3539s0015.1.p  98 KLALEIHKR 106
                          999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.8E-2413106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.33E-2116103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-2416106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-61740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-2117105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-66880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGDGCTTDHP LLARRYFPRV LYKVVNDRKT NSVISWGENG KSFIIWDQQE FCRDLLPRVV  60
RISSFPLFVK RLETYGFTKV ESDHFEYAND DFVKGKPKLA LEIHKRFVQT LIRPNSVFKP  120
LGIEPAALKA MMKQYKECLP PGTFDFKPSL RDPDALRAHL MDAMKQGRAV PKDPLSLHEK  180
ELAATLMADL KDVIKRRKAF LMEALAAAGP STGVTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3539s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216335e-47AL021633.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSA project).
GenBankAL1615785e-47AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankCP0026875e-47CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872461.11e-132heat stress transcription factor B-4b
TrEMBLD7MB831e-131D7MB83_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70008701e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-22heat shock transcription factor B4