PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.35519s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 284aa MW: 31260.8 Da PI: 6.6387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.35519s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.1e-07	47	91	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ RRd++++ f eL + l ++ ++K +K+++L+ +++ +k+ Araha.35519s0001.1.p 47 KAEREKLRRDKLKEQFLELGKALDPN----KPKSDKVSVLTDTIQMLKD 91 589******************998....89**********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-12	41	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.103	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.20E-4	45	96	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	47	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-5	47	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-6	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDQAKEPKNC SESDFADDSS ASSSSSGHNL RAEMVVEVKK EAVCSRKAER EKLRRDKLKE 60 QFLELGKALD PNKPKSDKVS VLTDTIQMLK DVMNQVDRLK AEYATLSQES RELIQEKSEL 120 REEKATLKSD IEILNAQYQH RIRTMVPWIP HYSYPIPVVA ITQGQSRFIP YSASVNTLTE 180 QQASVQQHSS SSGASNKQDF KVKSLALDLV MNNNHSGQGN DHKDDVGLEL ELKVHASSSA 240 QQDVSGKEKK GSLTTTASSS NSYSSSQAVQ DSSPGTVNDI LKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.35519s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251696	0.0	AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874034.1	1e-164	transcription factor bHLH11 isoform X1
Swissprot	Q8W2F2	1e-159	BH011_ARATH; Transcription factor bHLH11
TrEMBL	D7MBQ0	1e-159	D7MBQ0_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.7__460__AT4G36060.2	1e-160	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	1e-124	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.35519s0001.1.p

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]