PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3578s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 433aa    MW: 49124.7 Da    PI: 5.2995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3578s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM972.9e-30441831128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkya..........tgkrknr.a 77 
                          lppG++F P+d++l+ +yLk+ ++g k+ l +v i+ v+iy+++P++L  ++++ +ekew+  s+r+k  +           g+r++r  
  Araha.3578s0006.1.p  44 LPPGYQFVPSDQQLIFCYLKPYLDGYKNVLLNVpIHLVNIYESNPKQLSVEFEKgNEKEWFIISERNKVDQglsqkkrvgnGGTRQKRgD 133
                          79*************************9998999**************965554267799999999998885554444443344666655 PP

                  NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                          tk gyW+atg  +ev + ++ +vg k+ L++y  r+p+g  ktdW+m ey+l
  Araha.3578s0006.1.p 134 TKGGYWHATGAAQEVNV-GEGVVGYKTALAYY-VRTPSGDiKTDWLMLEYSL 183
                          *****************.999***********.55555544*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3834202IPR003441NAC domain
PROSITE profilePS5100535.62144202IPR003441NAC domain
PfamPF023655.6E-1545183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMPRMNKRKE RCSSEPQTQP PSENPSSSLE ADNMSPPSTL AYLLPPGYQF VPSDQQLIFC  60
YLKPYLDGYK NVLLNVPIHL VNIYESNPKQ LSVEFEKGNE KEWFIISERN KVDQGLSQKK  120
RVGNGGTRQK RGDTKGGYWH ATGAAQEVNV GEGVVGYKTA LAYYVRTPSG DIKTDWLMLE  180
YSLHHNCHNN DKDYTLCKIY MTPQAIKKTK EVEEENKKQK KGEGVSCGSI NGSKTAIAHV  240
EALEQQQRRN VEYHQPHQSQ APLDSFQPQP AHDVVYQQPQ PFSQAPYQQQ PSHDVVYQQP  300
HTPLLLPDLI SFERSEMAMT GWSNDKSTQE DLLDMSKDDR FFSMDELFNN VEEHGTVVTQ  360
QQQQQQQQQL STQILAPGQG QDSGSGMVTS NDNNFQEDYW LDICNGVYID IDALLNDVKT  420
GHDICLLERR NC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-154420017163NO APICAL MERISTEM PROTEIN
1ut4_B2e-154420017163NO APICAL MERISTEM PROTEIN
1ut7_A2e-154420017163NO APICAL MERISTEM PROTEIN
1ut7_B2e-154420017163NO APICAL MERISTEM PROTEIN
3swm_A2e-154420020166NAC domain-containing protein 19
3swm_B2e-154420020166NAC domain-containing protein 19
3swm_C2e-154420020166NAC domain-containing protein 19
3swm_D2e-154420020166NAC domain-containing protein 19
3swp_A2e-154420020166NAC domain-containing protein 19
3swp_B2e-154420020166NAC domain-containing protein 19
3swp_C2e-154420020166NAC domain-containing protein 19
3swp_D2e-154420020166NAC domain-containing protein 19
4dul_A2e-154420017163NAC domain-containing protein 19
4dul_B2e-154420017163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3578s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879736.11e-161uncharacterized protein LOC9313628 isoform X1
RefseqXP_020879737.11e-163uncharacterized protein LOC9313628 isoform X2
TrEMBLD7MI601e-176D7MI60_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70028171e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-108NAC domain containing protein 63