PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3681s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 440aa    MW: 49599.4 Da    PI: 6.8574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3681s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143303631553
                          HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                  HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                          ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Araha.3681s0001.1.p 330 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 363
                          7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.286315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-4329369No hitNo description
SuperFamilySSF474594.84E-9329380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-7330372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLREECTPSS SWWEDVQHHH NDHANSINST SFYHKNSNNN SNANASCEED NLSISTVSAS  60
NRLDLTAESS NHHSLSAPNQ PASSSDELLR DHVVSSYNHL WSLAFLPSRS LGDQMMDHHH  120
HHHNHHITSS RNSSTTSELP SFESACHNGN GWIYDTNQVR YEQSSDQRLS KLTDLVGKHW  180
SIAPPNNPDM NHNLHHHFDH DHSQTNDDVS MYRQALEVKN EEDLCYNNGS SGGGSLFHDP  240
IESSRNFLDV RLSRPLTDIN PSFKPCFKAL NVSEFNKKEH QTASLAAVRL GTTNVGKKKR  300
CEEISDEVSK KAKCSTGSTL SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY  360
INFYQEQVKL LSTPYMKNSS IKDPWGGWDR EDHNKRGPKH LDLRSRGLCL VPISCTPIAY  420
RDNSATDYWS PSYRGSLYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3681s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174391.50.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A178W3150.0A0A178W315_ARATH; Uncharacterized protein
STRINGAT1G31050.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein