PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3709s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 154aa    MW: 16951.8 Da    PI: 10.4719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3709s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-086596940
                         HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                           vt +kRr+g+  KA+ L+ L +a++a++  
  Araha.3709s0001.1.p 65 LRVTCTKRREGLYSKASQLCLLSGAQIAILAT 96
                         479*************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-849112IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.5454994IPR002100Transcription factor, MADS-box
CDDcd002665.81E-2150129No hitNo description
SuperFamilySSF554556.8E-1451123IPR002100Transcription factor, MADS-box
PfamPF003192.9E-105999IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVYSGLVIML TWPSLVTYLS PHRKKNSNSI SLKSLCGEIE KIRMVKKGGT KRKIAIEMIQ  60
KRDSLRVTCT KRREGLYSKA SQLCLLSGAQ IAILATPPSS ESNVSFYSFG HSSVDGIVSA  120
FLSGQRPVPV QEDNKAMRED VGICLTRKNL GLGF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3709s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230341e-132AB023034.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8.
GenBankCP0026881e-132CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890208.12e-80agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-32AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178UIC64e-74A0A178UIC6_ARATH; AGL83
STRINGAT5G49490.13e-73(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49490.12e-75AGAMOUS-like 83
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]