PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3759s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 516aa    MW: 58361.9 Da    PI: 8.824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3759s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-122741897
                         --HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +p  f+ +h  g +   +kt  l++  s  +W+vk+  ++++    lt+GWkeF+ a++L+ gD+v+F+  ++s+ +++v+++
  Araha.3759s0001.1.p  2 IPVVFFLKHieGRD--DQKTAELRSdASKITWKVKI--DGQR----LTDGWKEFALAHDLRIGDIVIFR--QESDLSFHVTLL 74
                         77888888875333..45677787758889******..8888....***********************..557777788876 PP
2B375.56.2e-24120211497
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + + +++l+ + + lp++f++e+g ++ +s +++l++e+grsW++kl+ + + g+++ ++GW +F++angL++gD+ +Fkl++ ++++lv
  Araha.3759s0001.1.p 120 AKVAPSSLSYDSMHLPRPFVRENGVVT-GSGEIVLMNEKGRSWKLKLRQKPSCGTVYVKGGWVSFCDANGLRAGDIYTFKLIQ-RGGTLV 207
                          456788899999***********9885.666****************99999999***************************9.566677 PP

                          EEEE CS
                   B3  94 vkvf 97 
                          ++++
  Araha.3759s0001.1.p 208 LRLL 211
                          7765 PP
3B370.81.8e-22265358499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + + +++l+ + l+lp++f++e+g +++++ +++l++e+++sW++ l+ +k+ g+ ++++GW+ F++angL++g ++ Fkl++ ++++lv
  Araha.3759s0001.1.p 265 ANVAPSSLRYDTLYLPRRFMRENGVDERCG-KIILMNEKSKSWTLDLKRKKSCGTSLIKRGWRTFCHANGLRAGSIIKFKLIK-KGGTLV 352
                          5678899999*************9998887.****************98888888**************************99.888899 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++++
  Araha.3759s0001.1.p 353 LRLISN 358
                          988775 PP
4B353.35.2e-17415512199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++ ++++++  ++ l+lp +f++ +g++  e++++tl d++g +W  +l+  + ks+r  +++GW++F +an +k+++++ ++l+++++
  Araha.3759s0001.1.p 415 FVTLTLTPYNILRSVLRLPIPFTRMNGIN--EDTKMTLLDKHGMKWLTTLRLvDYKSKRLRMAGGWQGFIQANCVKANESIRLELIWEED 502
                          677788999999999***********999..6679***************8889999********************************* PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          +++ +k+++k
  Araha.3759s0001.1.p 503 TSCILKFCSK 512
                          *9***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-7177IPR003340B3 DNA binding domain
CDDcd100171.35E-9174No hitNo description
PROSITE profilePS5086312.548177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-13284IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-8372IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-22791IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-21111208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-21115218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.567117214IPR003340B3 DNA binding domain
CDDcd100171.33E-22117212No hitNo description
SMARTSM010194.4E-31118214IPR003340B3 DNA binding domain
PfamPF023622.5E-22119211IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-21255353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20260361IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.622262359IPR003340B3 DNA binding domain
CDDcd100173.87E-20262357No hitNo description
SMARTSM010191.5E-28263359IPR003340B3 DNA binding domain
PfamPF023621.0E-20264358IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-17407511IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18409510IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-11414510No hitNo description
SMARTSM010191.1E-24415513IPR003340B3 DNA binding domain
PfamPF023626.7E-16415512IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478415512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
TIPVVFFLKH IEGRDDQKTA ELRSDASKIT WKVKIDGQRL TDGWKEFALA HDLRIGDIVI  60
FRQESDLSFH VTLLGPSCCE IQYGSCLDEE TNLEKKKKKV KQNPNGEAET SSLDRSCFVA  120
KVAPSSLSYD SMHLPRPFVR ENGVVTGSGE IVLMNEKGRS WKLKLRQKPS CGTVYVKGGW  180
VSFCDANGLR AGDIYTFKLI QRGGTLVLRL LPNESEEEAP DVSLSAEPES DAGSNLEMIQ  240
RKEKVKKNVT REAESSSLDP SCFVANVAPS SLRYDTLYLP RRFMRENGVD ERCGKIILMN  300
EKSKSWTLDL KRKKSCGTSL IKRGWRTFCH ANGLRAGSII KFKLIKKGGT LVLRLISNEP  360
EEEEEEECSE ANEVESLSTD QESNEESHNE KISRRKEKKG NLMWKASSSP SENRFVTLTL  420
TPYNILRSVL RLPIPFTRMN GINEDTKMTL LDKHGMKWLT TLRLVDYKSK RLRMAGGWQG  480
FIQANCVKAN ESIRLELIWE EDTSCILKFC SKVKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246QRKEKVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3759s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175140.0AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885760.10.0B3 domain-containing protein REM14 isoform X2
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LIB20.0D7LIB2_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.4__385__AT2G24650.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]