PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.38174s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 337aa    MW: 36987.2 Da    PI: 6.4188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.38174s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14143189354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Araha.38174s0003.1.p 143 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 189
                           79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14144199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14144198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-5153192No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-4229284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
QLISHHHHHH DPSQSETFGA SGNVGSGFTI FSQDSVSPIW SLPPSTSIQP PFDQFPPPSS  60
SPASFYGSFF NRSRAHHQGL QFGYEGFGGA TSAAHHHHEQ LRILSEALGP VVQAGSGPFG  120
LQAELGKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL AKLRSILPNT TKTDKASLLA  180
EVIQHVKELK RETSVISETN LIPTESDELT VAFTEEEETG DGRFVIKASL CCEDRSDLLP  240
DMIKTLKAMR LKTLKAEITT VGGRVKNVLF VTGEESSGEE VEEEYCIGTI EEALKAVMEK  300
SNVEESSSSG NAKRQRMSSH NTITIVEQQQ QQHHQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.38174s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511901.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLV4JST70.0V4JST7_EUTSA; Uncharacterized protein
STRINGBostr.26959s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-180bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]