PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.39182s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 82aa    MW: 9335.17 Da    PI: 8.9618
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.39182s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091155345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
  Araha.39182s0006.1.p 11 SWTRKENKLFERALATYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55
                          6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.363762IPR017884SANT domain
SMARTSM007178.6E-10860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-61164IPR009057Homeodomain-like
SuperFamilySSF466898.22E-141165IPR009057Homeodomain-like
PfamPF002494.3E-81155IPR001005SANT/Myb domain
CDDcd001671.49E-71258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSMSSSA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD  60
VNDIESGRYP HPNYRSNGNS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.39182s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0107701e-116BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds.
GenBankBT0112551e-116BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869031.13e-54protein RADIALIS-like 3
SwissprotQ6NNN03e-55RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLD7MBG58e-53D7MBG5_ARALL; At4g36570
STRINGscaffold_700452.11e-53(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1