PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.39644s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 435aa    MW: 49565.4 Da    PI: 5.0222
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.39644s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.43.8e-24213271155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                           kpr++Wt+eLH++F  ave+LG  ekA Pktil++    m+v+gLt+++v+SHLQkYR 
  Araha.39644s0001.1.p 213 KPRMQWTTELHHKFEVAVEKLGSLEKAFPKTILKCmqeeMNVQGLTRNNVASHLQKYRQ 271
                           79******************************9873333589****************6 PP
2Response_reg69.21.8e-23431491107
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vd + + + l+++++++  y +v+  +dgeea++ l +++  +Dl++ D  mp+++Gl++l +i +e  +lp+++++   ++e++ 
  Araha.39644s0001.1.p  43 VLLVDADSNSLLLIKNLMTHYSY-QVTKYEDGEEAMAFLLKNKqeIDLVIWDFHMPDINGLDALNTIGKEM-DLPVVIMSHDHKKETVM 129
                           89*********************.**************9555557**********************6644.7*******9999***** PP

                           HHHHTTESEEEESS--HHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeel 107
                           e +k+Ga dfl+Kp+++e +
  Araha.39644s0001.1.p 130 ESIKYGACDFLVKPVSKEVI 149
                           **************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.3E-3140164No hitNo description
SuperFamilySSF521724.13E-2940162IPR011006CheY-like superfamily
SMARTSM004481.5E-1941152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.87842157IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-2043149IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.67E-2044156No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23211275IPR009057Homeodomain-like
SuperFamilySSF466891.09E-14211274IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-20213271IPR006447Myb domain, plants
PfamPF002491.1E-8215270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSVSANLLDE NYRNLRKEVP CDDEIGSPIN DDDEEFPTTS VRVLLVDADS NSLLLIKNLM  60
THYSYQVTKY EDGEEAMAFL LKNKQEIDLV IWDFHMPDIN GLDALNTIGK EMDLPVVIMS  120
HDHKKETVME SIKYGACDFL VKPVSKEVIA VLWRHVYRKR MSKSGLDKPG ESGTVESDPD  180
EYDDLGQDNL YQSNEEGSKN TSDQKGEKPA TKKPRMQWTT ELHHKFEVAV EKLGSLEKAF  240
PKTILKCMQE EMNVQGLTRN NVASHLQKYR QNSKQKTRTH QEPQEDFVWR NAGPDAPLSA  300
SNPPLSSNLN IHATASYLMS NQAAPRASYF MNNQAAVNAA PIPYPSNSCL PMNNNNYFMT  360
KPFTYIDQFQ QQQQQYHSSL NLPSMLTKQE PRHVSSSAME NYDPFMISNP TFHFDHDEYF  420
PPEGFNNFDQ IGQN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.39644s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-166AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-166CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878470.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ80.0ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLD7LT850.0D7LT85_ARALL; Two-component response regulator
STRINGfgenesh2_kg.5__2757__AT3G62670.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.10.0response regulator 20