PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4066s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 673aa    MW: 76821.4 Da    PI: 8.3215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4066s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07474515240
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          ++W++eE + l ++ +++++g   +W+ I++++g+gR+ +++
  Araha.4066s0006.1.p 474 KPWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGTGRSVEEI 515
                          69***********************************99876 PP
2Myb_DNA-binding28.43.8e-09616659445
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  lv+a k ++++   +W+++a  ++ g+tl+qck ++ 
  Araha.4066s0006.1.p 616 WSAVQERALVQALKTFPKEtnqRWERVATAVP-GKTLNQCKKKFA 659
                          ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.88E-2064178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.3E-2096199IPR001623DnaJ domain
SMARTSM002717.7E-1599174IPR001623DnaJ domain
PROSITE profilePS5007617.756100182IPR001623DnaJ domain
PfamPF002263.2E-17100179IPR001623DnaJ domain
CDDcd062571.06E-12100171IPR001623DnaJ domain
PRINTSPR006258.7E-8105123IPR001623DnaJ domain
PRINTSPR006258.7E-8123138IPR001623DnaJ domain
PRINTSPR006258.7E-8154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.935468523IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-4469515IPR009057Homeodomain-like
SMARTSM007176.3E-5472525IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-7474517IPR009057Homeodomain-like
CDDcd001670.00136475515No hitNo description
SMARTSM007171.7E-8612664IPR001005SANT/Myb domain
SuperFamilySSF466897.4E-9614668IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-5616661IPR009057Homeodomain-like
CDDcd001671.11E-5616662No hitNo description
PROSITE profilePS500907.062616662IPR017877Myb-like domain
PfamPF002497.6E-7616660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSSELK DGQALYASSN CHPVKAVNRE PAGHAFHSAA LKLRGCTKEA  60
TSKNEDTDKK VPKEKDSEYI PSYDSHNIKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL AEETEEAKQA KKDEIESHFK LIQEAYEVLM DPTKRRIFDS  180
TDEFDDKVPT DCAPQDFFKV FGPAFKRNAR WSNSPLPDLG DENTPLKEVD RFYNTWYTFK  240
SWREFPEEEE HDIEQAESRE EKRWMERENA RKTQKARKEE YARIRTLVDN AYKKDTRIQK  300
RKDDEKAKKM QKKEAKVMAK KQQEEAAAAA IEEEKRRKEE EAKRAAEAAL LHKRAKEKEK  360
KLLRKERSRL RILSAPVLSQ RLLSISDEHV EDLCMSLNTE QLRKLCDKME NKEGLALAKV  420
IKNGNSIDDD DEIEIKEEKE EEEVQVAVKQ NGHIEANGHV EAKVDTATHQ KKEKPWSKEE  480
IDMLRKGTTK FPKGTSQRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR  540
KPAASIASPL STREELGEPI IPIKPHEENN SAKTETAEQN GKSEENNNSN GKSEENNNSN  600
GISEPDTAAG SDPDGWSAVQ ERALVQALKT FPKETNQRWE RVATAVPGKT LNQCKKKFAE  660
LKDIIRTKKP TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1419629920124Zuotin
5dje_B2e-1419629920124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4066s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190234.10.0DnaJ and myb-like DNA-binding domain-containing protein
RefseqNP_196229.10.0DnaJ and myb-like DNA-binding domain-containing protein
TrEMBLA0A178UFW70.0A0A178UFW7_ARATH; Uncharacterized protein
TrEMBLQ9LHS50.0Q9LHS5_ARATH; Cell division related protein-like
STRINGAT5G06110.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain