PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.40678s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 122aa MW: 13395.3 Da PI: 6.5767

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.40678s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	28.2	4.5e-09	17	58	17	59
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + g+ D C+ f++ g+egt++a+ C CgCH FH ++v+ Araha.40678s0001.1.p 17 IDGEPKDHCRHFLAG-GDEGTPEAFFCRGCGCHVCFHWKDVKM 58 6678889*****8.999****************999875 PP
2	ZF-HD_dimer	81.9	7.4e-26	67	119	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y +ClkNh a++Ggh ++DGCgEfm++ geegt++al CaACgCHR+FH ++ Araha.40678s0001.1.p 67 VKYGKCLKNHTAHMGGHcSLDGCGEFMAA-GEEGTPEALSCAACGCHRSFHEKD 119 89*************458****9.999****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-5	17	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-7	18	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-13	62	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.9E-24	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-22	68	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.11	69	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSKWREIVTY GMCVNRIDGE PKDHCRHFLA GGDEGTPEAF FCRGCGCHVC FHWKDVKMEI 60 DMSTAIVKYG KCLKNHTAHM GGHCSLDGCG EFMAAGEEGT PEALSCAACG CHRSFHEKDY 120 L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.40678s0001.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420655.1	2e-78	PREDICTED: zinc-finger homeodomain protein 8-like
TrEMBL	A0A1J3ELS0	1e-56	A0A1J3ELS0_NOCCA; Mini zinc finger protein 1 (Fragment)
STRING	XP_010420655.1	6e-78	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-19	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Araha.40678s0001.1.p