PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.40961s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 155aa MW: 17309.6 Da PI: 4.9526

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.40961s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52.4	1.5e-16	5	63	1	58
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..edam 58 +Ca+Ck+l+++Ca+ C++ap+fp+ + +f+ vh++FGa nv ++l++l+ e+ + am Araha.40961s0001.1.p 5 RCAVCKILKETCAPRCIYAPHFPSID-TRFEDVHQVFGAVNVRNILDNLESPEQhiKSAM 63 6*********************98.89*****************954443125555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.952	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-14	5	58	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MTSTRCAVCK ILKETCAPRC IYAPHFPSID TRFEDVHQVF GAVNVRNILD NLESPEQHIK 60 SAMNELETYV GHDQMPKFYD LPMPDDFLIT PASSDSFIEK IKSLNDVQKN QLMQLQTSAD 120 VQMIMSNIFW KKEDQKMDDG HGHGGDGAST SAGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.40961s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869811.1	5e-95	LOB domain-containing protein 32
Swissprot	O49651	4e-69	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	D7ME15	1e-93	D7ME15_ARALL; Uncharacterized protein
STRING	scaffold_702084.1	2e-94	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	9e-66	LOB domain-containing protein 32

Link Out ? help Back to Top
Phytozome	Araha.40961s0001.1.p