PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.41052s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 375aa    MW: 41633.7 Da    PI: 4.5848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.41052s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS210.41e-641233752261
                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           +e L++++++v+s++l+laq +L+rl+++ +sp+g+++qR+a+yf+eAL + l++     ++  p++ +s+++ ++++ a k +s +sP
  Araha.41052s0001.1.p 123 IEDLIRAVDFVESDELQLAQVVLSRLNQRlRSPAGRALQRAAFYFKEALGSLLTG-----SNRNPTRLSSWSDIVQRIRAIKEYSGISP 206
                           678*************************99*************************.....88899999********************* PP

                  GRAS  90 ilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                           i+ fsh+taNqaIl++++++     vH++Dfdi+ G+Q+++L++++++++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++
  Araha.41052s0001.1.p 207 IPLFSHFTANQAILDSLSSQsssPFVHVVDFDIGFGGQYASLMREITEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIR 293
                           *****************99977789**************************************66..9********************* PP

                  GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerfleal 261
                           f+++++++k++e+l+++++r+ +gE ++V ++ +++r +       s ++++++ ++++sPkvvv+v++e  ++  +s+sF ++f++al
  Araha.41052s0001.1.p 294 FQIEFVLMKTFEMLSFKAIRFVEGERTVVLISPAIFRRV-------SGITDFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSAL 375
                           *************************************98.......44677*******************766778999******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.44796375IPR005202Transcription factor GRAS
PfamPF035143.5E-62123375IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MKIPASSPQD TTNNNNTNST DSNHLSMDEH VMRSMDWDSI MKELELDDDS APNSLKTGFT  60
TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG QNQTTGYGFN SLDSVDNGGF  120
DFIEDLIRAV DFVESDELQL AQVVLSRLNQ RLRSPAGRAL QRAAFYFKEA LGSLLTGSNR  180
NPTRLSSWSD IVQRIRAIKE YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFDIG  240
FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL  300
MKTFEMLSFK AIRFVEGERT VVLISPAIFR RVSGITDFVN NLRRVSPKVV VFVDSEGWTE  360
IAGSGSFRRE FVSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-1612837524266Protein SCARECROW
5b3h_D9e-1612837524266Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.41052s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankAK2296370.0AK229637.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL19-66-B20.
GenBankAL1615890.0AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997080.0Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872480.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLD7MBE90.0D7MBE9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__396__AT4G36710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]