PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4168s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 301aa    MW: 33830.6 Da    PI: 5.776
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4168s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.96e-37241152102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ Fk+g+k
  Araha.4168s0010.1.p  24 FLTKTYNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFKRGEK 104
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Araha.4168s0010.1.p 105 RLLREIQRRKI 115
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.7E-5620113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTSPPVDAMV TGESSSQRSI PTPFLTKTYN LVEDSSIDDV ISWNEDGSSF IVWNPTDFAK  60
DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDFFK RGEKRLLREI QRRKITTTTH  120
QTVVAPSSEQ RIQTMVVSPS NSGEDNNNNM NNLVMSSPSS WYCQTTTTGD GGLSVELLEE  180
NEKLRSQNIQ LNRELTQMKS ICDNIFSLMS NYVGSQATDQ SYSPGGSSSQ PVEFLPVKRF  240
SEMEVEEEAS PRLFGVPIGL KRTRSEGVQV KTASTAAVVG ENSDEWLTRH CNRTNQRVCN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23611312129Heat shock factor protein 1
5d5v_B1e-23611312129Heat shock factor protein 1
5d5v_D1e-23611312129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4168s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518670.0AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene).
GenBankAK2296900.0AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17.
GenBankBT0085420.0BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds.
GenBankBT0086580.0BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864765.10.0heat stress transcription factor B-2a
SwissprotQ9SCW40.0HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLD7MKQ10.0D7MKQ1_ARALL; Uncharacterized protein
STRINGscaffold_802851.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-166heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]