PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.41818s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 211aa    MW: 23386.5 Da    PI: 5.2743
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.41818s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12104128226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ktelC+++++tG C+ Gd+C+FaHg
  Araha.41818s0001.1.p 104 KTELCNRWLKTGACHIGDNCPFAHG 128
                           9***********************9 PP
2zf-CCCH24.35.4e-08143165325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           te Cr+f+++  C+yG+rC+F H
  Araha.41818s0001.1.p 143 TEVCRTFLAGDVCSYGNRCPFRH 165
                           89*******55**********77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.65E-5171IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005901.86E-4672No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-1398133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10101134IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53102130IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-8136165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7137166IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953140168IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5143165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEQRVFLWG LDPNITEDDI FNLVDWNRET SLISVRIVPD PLFNMARAIL IYTDPKEARD  60
HATALDGFPL GIGYISTSLV SFPEGLQGER DALKLEVSRQ GMMKTELCNR WLKTGACHIG  120
DNCPFAHGTD ELTHVLTHPR YITEVCRTFL AGDVCSYGNR CPFRHWLTKS EASTMATLPT  180
VLVTGASGRT GKSFFNFVAA DFDFSSLSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-14103165466Butyrate response factor 2
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.41818s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-38C3H family protein