PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.41818s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 222aa MW: 25140.6 Da PI: 9.0454

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.41818s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.3	3.3e-32	52	182	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat..gkrknratksgyWka 85 lppG++F Ptdeel+v+yL++ ++g+k l++v i++v+iy+++P++L k +ka+ekew f s+r++ + gkr++r+ + gyW+ Araha.41818s0002.1.p 52 LPPGYKFAPTDEELIVHYLNPFAQGNKDALHNVpIHHVNIYESNPQQLSeKYAKANEKEWLFVSPRKQIVCKggGKRQKRSDDGGYWHV 140 79***********************9999999**********9567788999***9998775348899*** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++lv k++L +y+g++p+g+k d +m+e+ l Araha.41818s0002.1.p 141 CVACQKIYM-GNRLVYYKTSLEYYNGKQPNGTKGDYLMQEFCL 182 *****.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-39	43	197	IPR003441	NAC domain
PROSITE profile	PS51005	36.467	52	197	IPR003441	NAC domain
Pfam	PF02365	1.6E-14	53	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MAIPQGNKRK ARSSPGRKIQ LPEPPHNPDV ASSSSSSVAQ NLISPSIETF VLPPGYKFAP 60 TDEELIVHYL NPFAQGNKDA LHNVPIHHVN IYESNPQQLS EKYAKANEKE WLFVSPRKQI 120 VCKGGGKRQK RSDDGGYWHV CVACQKIYMG NRLVYYKTSL EYYNGKQPNG TKGDYLMQEF 180 CLENNNENQA LCKIYLTPKA AKIQKKSEEE EKEKLLKEEA AL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	52	195	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	52	195	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	52	195	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	52	195	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	52	195	20	166	NAC domain-containing protein 19
3swm_B	2e-19	52	195	20	166	NAC domain-containing protein 19
3swm_C	2e-19	52	195	20	166	NAC domain-containing protein 19
3swm_D	2e-19	52	195	20	166	NAC domain-containing protein 19
3swp_A	2e-19	52	195	20	166	NAC domain-containing protein 19
3swp_B	2e-19	52	195	20	166	NAC domain-containing protein 19
3swp_C	2e-19	52	195	20	166	NAC domain-containing protein 19
3swp_D	2e-19	52	195	20	166	NAC domain-containing protein 19
4dul_A	2e-19	52	195	17	163	NAC domain-containing protein 19
4dul_B	2e-19	52	195	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.41818s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191212.1	3e-76	NAC domain containing protein 64
TrEMBL	A0A384KMI2	7e-75	A0A384KMI2_ARATH; NAC064
TrEMBL	Q9LXY7	7e-75	Q9LXY7_ARATH; NAC domain containing protein 64
STRING	AT3G56530.1	1e-75	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	2e-78	NAC domain containing protein 64

Link Out ? help Back to Top
Phytozome	Araha.41818s0002.1.p