PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.41871s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 328aa    MW: 36542.3 Da    PI: 7.0706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.41871s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-1586137155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++    + K + a+i+  A+++Ik+L+
  Araha.41871s0001.1.p  86 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAHKGDQASIVGGAIDFIKELE 137
                           79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-1584149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1384139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-1384140No hitNo description
PROSITE profilePS5088815.69485136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1286137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-991142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISTKTIPEIS HQEPPPPRQP  60
PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ MNQHLSVLRS LMPQPFAHKG  120
DQASIVGGAI DFIKELEHKL LSLEAQKLHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL  180
SHFFLHSYDP SQENRNGSTS SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTVATTRPP  240
QLSKLVAALQ SLSLSILHLS VTTLDTCAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE  300
EEPFCCTPMS ELPFDFSLNH SNATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KKRRRRK
26673KKRRRRKP
36772KRRRRK
46874RRRRKPR
58697RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.41871s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568666.10.0beta HLH protein 71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLC0SVS70.0C0SVS7_ARATH; Uncharacterized protein At5g46690 (Fragment)
STRINGAT5G46690.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-174beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]