PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4200s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 256aa    MW: 29234.5 Da    PI: 9.8643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4200s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31115.1e-3599211199
                          EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                          f+k ltpsdv+k++rlv+pk++ae++               +++e+++ l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+ 
  Araha.4200s0011.1.p  99 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssaatdTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDP 188
                          99**********************************99996667899******************************************* PP

                          T-EEEEEE-SSSEE..EEEEE-S CS
                   B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                          gD+v F+++++++++l+++++r+
  Araha.4200s0011.1.p 189 GDVVFFQRHRSDSRRLFIGWRRR 211
                          *******98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4195222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-3197211IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-2798202No hitNo description
PROSITE profilePS5086314.57999212IPR003340B3 DNA binding domain
SMARTSM010193.4E-2799212IPR003340B3 DNA binding domain
PfamPF023622.8E-3299211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTNANKPHFF ISLSFVSYYI STTSTHLSLS PNPLSLYSPF ALYLSLFRFL SPRKMSVNHY  60
STDHHHTLLW QQQHRHTTDT SETTTTATWL HDDLKESLFE KSLTPSDVGK LNRLVIPKQH  120
AEKYFPLNAV VVSSAATDTS SSEKGMLLSF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF  180
VKDKQLDPGD VVFFQRHRSD SRRLFIGWRR RGQGSSSAAA INSAVNTSSM GALSYHQLHA  240
TSNYSNPPSH SEYSPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-52952114113B3 domain-containing transcription factor NGA1
5os9_B3e-52952114113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4200s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119177.11e-123AP2/B3-like transcriptional factor family protein
RefseqNP_001331851.11e-123AP2/B3-like transcriptional factor family protein
SwissprotQ9FNI31e-124Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A178UCA81e-122A0A178UCA8_ARATH; AP2/B3-like transcriptional factor family protein
TrEMBLA0A384LF591e-122A0A384LF59_ARATH; DPA4
STRINGAT5G06250.21e-122(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-110B3 family protein