PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4235s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 364aa    MW: 41171 Da    PI: 7.6837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4235s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ede+l+++++ +G g+W++++++ g+ R++k+c++rw +yl
  Araha.4235s0011.1.p 14 RGLWSPDEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding48.42.2e-1567109145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Araha.4235s0011.1.p  67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                          899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.571961IPR017930Myb domain
SuperFamilySSF466893.47E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-141363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001671.21E-121761No hitNo description
PROSITE profilePS5129425.20962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2565116IPR009057Homeodomain-like
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.4E-1467110IPR001005SANT/Myb domain
CDDcd001672.83E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPD EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMSHH  120
HHHHGHHLHH HHHHLSSMAT LLTNLPYHNG FHPTTVDDES SRFMSNIITN TNPNFITPNH  180
LSLPSPHVMT PLMFPTSREG DFKFLTTNNT NQSHHQDNNH YNNLDILSAA PTINNHHQPS  240
LSSCPHDNDP QWPALPDFPA SNISAFQETL QDYDDATKLN VFVTPYNENA KKLLCGEVLE  300
GKVLSSSSPI SQDHGLLLPT TYNFQMTSTS DHHHHRVDSY INHMIIPSSS SSSPISCGQY  360
VIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4235s0011.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195880.0AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888037.10.0transcription factor MYB26
RefseqXP_020888038.10.0transcription factor MYB26
SwissprotQ9SPG30.0MYB26_ARATH; Transcription factor MYB26
TrEMBLD7L2970.0D7L297_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1496__AT3G13890.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128031930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.20.0myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]