PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.42552s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 321aa    MW: 36763.1 Da    PI: 8.017
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.42552s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.76.4e-24226275151
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                           k r++Wt+eLH++Fv+av+ L G +kA+Pk+ilelm+v+ L++e+v+SHLQ
  Araha.42552s0001.1.p 226 KRRVVWTKELHKKFVDAVKYL-GLDKAVPKKILELMNVENLSRENVASHLQ 275
                           689******************.***************************** PP
2Response_reg48.64.3e-17461531108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+ d++p+ ++ l++ l+k +y +v+ + +  +a+  l++++  +D+ ++  + ++ d +++l+ei ++  +lpii+++  ++ + + 
  Araha.42552s0001.1.p  46 VLVFDEDPSHLQMLETQLQKFQY-QVTICNEENKAMYALRNHRnrFDIAIIQGNNSDGDIFRFLSEIGSAM-DLPIIIISEDKSVQSVM 132
                           8999*******************.999999999999999988889**********************7766.8**************** PP

                           HHHHTTESEEEESS--HHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelv 108
                           + +  Ga d+l Kp++peel+
  Araha.42552s0001.1.p 133 KWMINGATDYLIKPIKPEELR 153
                           *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.4E-2242168IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-2143189No hitNo description
SMARTSM004481.6E-644156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.3545160IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-1146153IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.87E-1147153No hitNo description
PROSITE profilePS5129410.698223282IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-24223275IPR009057Homeodomain-like
SuperFamilySSF466894.12E-17224279IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24226279IPR006447Myb domain, plants
PfamPF002494.9E-7228275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQPSNMAKKL EHRGVMANDD GDGPFRDPLP NFSDMFPSNF PDGLRVLVFD EDPSHLQMLE  60
TQLQKFQYQV TICNEENKAM YALRNHRNRF DIAIIQGNNS DGDIFRFLSE IGSAMDLPII  120
IISEDKSVQS VMKWMINGAT DYLIKPIKPE ELRIIFKHLV KKVRERKSVV TGEAEEKAGG  180
EKSSSVGDST IRNPNKRKRS MCLDAEVKEE DRHDHNDRAC ASSSKKRRVV WTKELHKKFV  240
DAVKYLGLDK AVPKKILELM NVENLSRENV ASHLQVTFLL VYTTHNCSTT KLNPFISTSL  300
PYIHIREYIL NLDTLWEIIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17222275154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.42552s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863976.20.0putative two-component response regulator-like APRR4 isoform X2
SwissprotQ9FJ161e-159APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLD7MNQ40.0D7MNQ4_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80009610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-150pseudo-response regulator 4