PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.42598s0003.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 175aa    MW: 19040.8 Da    PI: 6.852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.42598s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0590112123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ CgksF++   L  H  +H
  Araha.42598s0003.2.p  90 YKCSVCGKSFPSYQALGGHKTSH 112
                           9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-787114No hitNo description
Gene3DG3DSA:3.30.160.601.5E-488112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.4E-1590114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.74190112IPR007087Zinc finger, C2H2
SMARTSM003550.002290112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139121.8E-7116132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MALDTLNSPT STSTTTAPPP FLDETESENL ESWTKRKRTK RHRIDQPNPP NEEEYLALCL  60
LMLARGSSDH HSSPSDHHSL SPPSDQQKDY KCSVCGKSFP SYQALGGHKT SHRKPSFPSG  120
QALGGHKRCH YDGGNGNGNG DNSHRFDLNL PADQVSDETL GKSQLSGEET KSVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.42598s0003.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329781e-138AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293771e-138BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026861e-138CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190562.18e-87C2H2 and C2HC zinc fingers superfamily protein
SwissprotQ9SSW12e-49AZF1_ARATH; Zinc finger protein AZF1
TrEMBLQ9SN242e-85Q9SN24_ARATH; At3g49930
STRINGAT3G49930.13e-86(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-74C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]