PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.43350s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRAS

Protein Properties

Length: 589aa MW: 65617.8 Da PI: 6.8923

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.43350s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.8	1.3e-108	275	570	1	302
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv+lL+ c ea++s++ +++++++ar +lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+ Araha.43350s0001.1.p 275 LVNLLTGCLEAIRSRNIAAINHFIARTGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVT 363 6899*****************************99*******************************99*********** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 Pi+kf h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+ sk el+etg+rL+ fAe+++++fe Araha.43350s0001.1.p 364 PIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFE 448 *********************************************************....******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++ v++rled++l++L+vk+gE++aVn+v+q+h++l + + + +++L l++s++P +v++eqea+hnse++ +r++++l+yysa Araha.43350s0001.1.p 449 FHP-VVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLRYYSA 534 .7*****************************88777777..99************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvaceg 302 +fd+++++l+++s r+k+E++l+grei+n+vaceg Araha.43350s0001.1.p 535 MFDAIHTNLATDSLIRVKIEEMLFGREIRNIVACEG 570 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.71	249	588	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-106	275	570	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSNRPLG 60 RSISLDNNNN NSNKPVERKT SGCSLKQNIK LPPLATTRGN GEGFSWNNDN NNNRGKSLKR 120 LAEEDESCFS RAKRTKCENE GGFWFEHFTG QNSSSSPALP FSLTCSGDDE EKVCFVPSEV 180 ISQPLPNWVD SVITELAGIG DKDVESSLPA AVKEASGSST SASSESRSLS HRVPEPTNGS 240 RNPYTHRGAT EERTSGNIII NNNNHRNDLQ RDFELVNLLT GCLEAIRSRN IAAINHFIAR 300 TGDLASPRGR TPMTRLIAYY IEALALRVAR MWPHIFHIAP PREFDRTVED ESGNALRFLN 360 QVTPIPKFIH FTANEMLLRA FEGKERVHII DFDIKQGLQW PSFFQSLASR SNPPHHVRIT 420 GIGESKLELN ETGDRLHGFA EAMNLQFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCVMQM 480 HKTLYDGTGA AIRDFLGLIR STNPIALVLA EQEAEHNSEQ LETRVCNSLR YYSAMFDAIH 540 TNLATDSLIR VKIEEMLFGR EIRNIVACEG IVLMFNSDIL SSKLESYR*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSNRPLG  60
RSISLDNNNN NSNKPVERKT SGCSLKQNIK LPPLATTRGN GEGFSWNNDN NNNRGKSLKR  120
LAEEDESCFS RAKRTKCENE GGFWFEHFTG QNSSSSPALP FSLTCSGDDE EKVCFVPSEV  180
ISQPLPNWVD SVITELAGIG DKDVESSLPA AVKEASGSST SASSESRSLS HRVPEPTNGS  240
RNPYTHRGAT EERTSGNIII NNNNHRNDLQ RDFELVNLLT GCLEAIRSRN IAAINHFIAR  300
TGDLASPRGR TPMTRLIAYY IEALALRVAR MWPHIFHIAP PREFDRTVED ESGNALRFLN  360
QVTPIPKFIH FTANEMLLRA FEGKERVHII DFDIKQGLQW PSFFQSLASR SNPPHHVRIT  420
GIGESKLELN ETGDRLHGFA EAMNLQFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCVMQM  480
HKTLYDGTGA AIRDFLGLIR STNPIALVLA EQEAEHNSEQ LETRVCNSLR YYSAMFDAIH  540
TNLATDSLIR VKIEEMLFGR EIRNIVACEG IVLMFNSDIL SSKLESYR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-52	282	570	25	307	Protein SCARECROW
5b3h_D	2e-52	282	570	25	307	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.43350s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010795	0.0	AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176498.1	0.0	GRAS family transcription factor
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	D7KU23	0.0	D7KU23_ARALL; Scarecrow transcription factor family protein
STRING	fgenesh1_pg.C_scaffold_2000170	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Araha.43350s0001.1.p