PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4353s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 194aa    MW: 22711.6 Da    PI: 4.5624
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4353s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.69.3e-31171381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+P de+lv eyL+kkv ++++++   ++e+  ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +
  Araha.4353s0004.1.p  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELCSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-E 96 
                          79*************************999..49*************6...56789*******99875....899********98766.6 PP

                  NAM  91 evlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++++++     g +kt++fy g++p+g+ t W+m e+rl
  Araha.4353s0004.1.p  97 AVMEAGDRDcihlEGRRKTFAFYIGKKPRGTITPWIMYEFRL 138
                          77776444455559**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-327166IPR003441NAC domain
PROSITE profilePS5100532.41617167IPR003441NAC domain
PfamPF023651.2E-1818138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LCSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEAVME AGDRDCIHLE GRRKTFAFYI  120
GKKPRGTITP WIMYEFRLLS SSATRWLSSP LPRGEVGKWR AVKVVVKEEN EEEMVEDEHE  180
SDESDGEEVI QSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-181514215146NO APICAL MERISTEM PROTEIN
1ut4_B1e-181514215146NO APICAL MERISTEM PROTEIN
1ut7_A1e-181514215146NO APICAL MERISTEM PROTEIN
1ut7_B1e-181514215146NO APICAL MERISTEM PROTEIN
3swm_A1e-181514218149NAC domain-containing protein 19
3swm_B1e-181514218149NAC domain-containing protein 19
3swm_C1e-181514218149NAC domain-containing protein 19
3swm_D1e-181514218149NAC domain-containing protein 19
3swp_A1e-181514218149NAC domain-containing protein 19
3swp_B1e-181514218149NAC domain-containing protein 19
3swp_C1e-181514218149NAC domain-containing protein 19
3swp_D1e-181514218149NAC domain-containing protein 19
4dul_A1e-181514215146NAC domain-containing protein 19
4dul_B1e-181514215146NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4353s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
GenBankBT0156690.0BT015669.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-126NAC domain containing protein 97
TrEMBLA0A178UQH21e-125A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-125Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGAT5G50820.11e-126(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-97NAC domain containing protein 97