PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4375s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 242aa MW: 27104.5 Da PI: 8.1909

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4375s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.8	2e-40	5	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t sgyWkat Araha.4375s0001.1.p 5 LPVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGSGYWKAT 94 79**************************999**********9656766667888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Araha.4375s0001.1.p 95 GSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-44	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	46.783	5	160	IPR003441	NAC domain
Pfam	PF02365	4.9E-20	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEEELPVGFR FYPTEVELLT YYLRIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK 120 APTGRKTKWK MNEYKAVETN SISTIPKLRN EFSICRIYIK SGSSRAFDRR PTEAYAIERT 180 LPSHGVETSS RATLSTSPET SHSGGNQIDL PENVTTITQS ISEMVDGLSQ PFWEWEQMNW 240 S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-35	5	165	20	173	NAC domain-containing protein 19
3swm_B	1e-35	5	165	20	173	NAC domain-containing protein 19
3swm_C	1e-35	5	165	20	173	NAC domain-containing protein 19
3swm_D	1e-35	5	165	20	173	NAC domain-containing protein 19
3swp_A	1e-35	5	165	20	173	NAC domain-containing protein 19
3swp_B	1e-35	5	165	20	173	NAC domain-containing protein 19
3swp_C	1e-35	5	165	20	173	NAC domain-containing protein 19
3swp_D	1e-35	5	165	20	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4375s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	1e-118	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	1e-118	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001118771.1	1e-168	NAC domain containing protein 61
Swissprot	Q9M290	1e-156	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	B3H506	1e-167	B3H506_ARATH; NAC domain containing protein 61
STRING	AT3G44350.2	1e-168	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-161	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Araha.4375s0001.1.p