PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4378s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25242.8 Da    PI: 9.0414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4378s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.4e-205598649
                         HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         + +rqvtfskRr g++KKA ELSvLC+a++ +i fs  +++y +
  Araha.4378s0005.1.p 55 ENRRQVTFSKRRLGLFKKAAELSVLCGAQIGIITFSRVDRIYSF 98
                         579***********************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-2642101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.51642102IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-2243111IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-194464IPR002100Transcription factor, MADS-box
PfamPF003192.8E-205498IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-196479IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-1979100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEDGEASTIT CLPTTKQNPL QNPSLLVNPK KETKLKTPKT TKGRQKIEIK KIILENRRQV  60
TFSKRRLGLF KKAAELSVLC GAQIGIITFS RVDRIYSFGN VDSLIDKYLR KAPVMLRSHP  120
GGNVANGEED NDGLMWWERA VESVPEEDIE EYKKALSVLR ENLLTRIYQM SGDRTVENLP  180
AFPNEMAMAD WKSTNENLMA RNDRGYAGNG GDLEFAFMSQ NGGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-1543111268MEF2C
5f28_B8e-1543111268MEF2C
5f28_C8e-1543111268MEF2C
5f28_D8e-1543111268MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4378s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0165290.0AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBankAY1412350.0AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds.
GenBankBT0256470.0BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464210.0DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888870.11e-149agamous-like MADS-box protein AGL61
TrEMBLD7KZC61e-147D7KZC6_ARALL; MADS-box protein
STRINGscaffold_202161.11e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-138M-type_MADS family protein