PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4416s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 158aa MW: 17435.8 Da PI: 6.6542

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4416s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	22.1	4.4e-07	2	65	34	96
DUF260 34 hklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 h+ F++ nv+++l++l ++e++e+a+++ y A+a+ + ++G+ ++il+++ l+++++ +++ Araha.4416s0003.1.p 2 HQDFRVVNVCNILDNLeSPEQHEIAANCQRYAAKACRCNSISGCPAMILHYNCILNSVEQGIKS 65 7779**********6778899***************************999998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.145	1	70	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-4	2	64	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
IHQDFRVVNV CNILDNLESP EQHEIAANCQ RYAAKACRCN SISGCPAMIL HYNCILNSVE 60 QGIKSAINEF GTYVGPDQVS KFYDFPMPAD FLTTSGFLDS FLEKIKNLNA VKKNQLMQLL 120 AADARMIMNK IFWSRKDQKM DDGHGHGADG ASTSSGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4416s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869811.1	9e-74	LOB domain-containing protein 32
Swissprot	O49651	1e-61	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	D7ME15	2e-72	D7ME15_ARALL; Uncharacterized protein
STRING	scaffold_702084.1	4e-73	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	1e-56	LOB domain-containing protein 32

Link Out ? help Back to Top
Phytozome	Araha.4416s0003.1.p