PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4451s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 280aa    MW: 31148.1 Da    PI: 8.3345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4451s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033219241223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp Cg  Fs+  +L+ H  + H
  Araha.4451s0001.1.p 219 VCPQCGAKFSSVTTLVEHVEKtH 241
                          6*****************99888 PP
2zf-C2H2201.9e-06255277223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp+C++ F+++ +L++Hi + H
  Araha.4451s0001.1.p 255 VCPKCSRGFRDPVDLVNHIEReH 277
                          7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183107.59E-12457No hitNo description
PROSITE profilePS510397.7861056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.9E-131349IPR000058Zinc finger, AN1-type
SMARTSM001548.1E-71352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.3E-991142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.7E-893141No hitNo description
PROSITE profilePS510398.18498147IPR000058Zinc finger, AN1-type
PfamPF014284.1E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
PROSITE profilePS5015710.346218246IPR007087Zinc finger, C2H2
SMARTSM003550.019218241IPR015880Zinc finger, C2H2-like
PfamPF056059.8E-7220278IPR008598Drought induced 19 protein type, zinc-binding domain
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4222241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.494254279IPR007087Zinc finger, C2H2
SMARTSM003556.2254277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280256277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKLPFMGFLS SSSSSRKEAK TTRPTKARAS TSSSSSSSSS  180
SSRWSNLLSS AEAGISRLGN DISQKLQFSS SSNDDIVEVC PQCGAKFSSV TTLVEHVEKT  240
HERNKQNHGN VTVDVCPKCS RGFRDPVDLV NHIEREHRG*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4451s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-177SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLD7LHY71e-176D7LHY7_ARALL; Uncharacterized protein
STRINGXP_010505969.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-173C2H2 family protein