PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.44556s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 198aa    MW: 22930.5 Da    PI: 9.9834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.44556s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.4e-0879110135
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskaps 35 
                           +r++h ++Er+RR++ N+ ++ L+ ++P ++   s
  Araha.44556s0001.1.p  79 QRMNHIAVERNRRKQTNHFLSILKFMMPLSY---S 110
                           79**************************974...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
SuperFamilySSF474591.05E-670113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-476109No hitNo description
PROSITE profilePS508889.52878135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-579110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-480128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MWKHPLSYEI LDYLQNFVVS NSENVASQQN LLLSCSITEE KSHLTEKLSP VRERCGCGDV  60
LSRKRRRRSE KTMEDKEYQR MNHIAVERNR RKQTNHFLSI LKFMMPLSYS QPVTMVEKRA  120
NIKLLTKTRP RLLFKIINEF YSLGLSTLHL NLTTSKDTSL FTFSVKVEAD CQLTPSGNEV  180
ANAVHEVVRR VHKESLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266RKRRR
26268RKRRRRS
37990RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.44556s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0700951e-104AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBankAY0967041e-104AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866665.19e-54transcription factor bHLH99
SwissprotQ9FKQ66e-46BH099_ARATH; Transcription factor bHLH99
TrEMBLD7MTX12e-52D7MTX1_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pg.C_scaffold_80025203e-53(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149591619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65320.13e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]