PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.44556s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 347aa    MW: 39729.4 Da    PI: 8.8101
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.44556s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.8e-25655251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +++++s++++++++R+++i+KKA ELS+LC++ev+vi++++ g+l+++++
  Araha.44556s0002.1.p  6 FSSSSSRNSTSLTNRLKTIFKKALELSILCAIEVCVIYYGPGGELKTWPK 55
                          799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-4156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.47157IPR002100Transcription factor, MADS-box
PfamPF003194.9E-13853IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-151085IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MKQASFSSSS SRNSTSLTNR LKTIFKKALE LSILCAIEVC VIYYGPGGEL KTWPKERETV  60
KDMALRYKEA RKRKKSLNLH EFLDKDNGKK KQKKNVKYHD WYPNFDYYSP HQLSQLNQSL  120
EQTLSTLQER LRFVEAQKQQ NTNLVHQSLT PPYLNQNQHL NPSKFSLYMY NHGDATLSQL  180
PLSASHSNQL TNYQNHLMQQ DLYGFGQNLC LENITNTNFQ RPYVSNTQDY SPLLSAQASA  240
VNNYGLNNHL MQKQELHGID QNVCMLSEII INNNNGLPHP NLSNTVPHEF SSDFQQNPYR  300
NTVGNTSFSQ DMFSSYDASS LHQASSLPSL HNIPNSYCFS DNSRLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRKK
27092RKRKKSLNLHEFLDKDNGKKKQK
37193KRKKSLNLHEFLDKDNGKKKQKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.44556s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114790.0AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBankAY1412240.0AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864952.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL08e-75AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MTX20.0D7MTX2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2584__AT5G65330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.10.0AGAMOUS-like 78
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]