PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4507s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 519aa    MW: 57940.1 Da    PI: 7.6555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4507s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.8e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Araha.4507s0007.1.p  7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-11546No hitNo description
CDDcd002026.09E-17666No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.095740IPR000679Zinc finger, GATA-type
PfamPF003205.0E-14741IPR000679Zinc finger, GATA-type
PfamPF139192.8E-10273369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDQ  60
HRFQRMKSIS VSYKNKETKM LKRKAIQENI IIKRPVLEFN YGLKKAVIEE DASNRSSSGS  120
AVSNSESCAQ FSSADGSELS GPSQSNAWDT TVPCKRRTCV GRPKSSSVEK LTKDLYNILQ  180
EQQSSCLSVS SEEDLLFENE MSMVSVEIGH GSVLMKNPHS FSREEESEAS SLSSIENKSS  240
ISEAYSHSVK RVEIGAVRGS YYGGQEIKQE QFKRNKSQTE RVHVLGSHGS PLCSIDLKDV  300
FNFNEFIEQF TEEEQKKLMK LLPQIDSDDL PDSLRIMFES AQFKDNFSLF QQLIADGVFD  360
VSSSSGAKLE DIRTFKKLAL TDFNKSRLVE SYNLLKEREK GTGDSVTTTS KISIPNVPKN  420
IVTIKRRCED QNQFKSESRG LMRSPKRVMK MKASHESKVM TENNVSCFRP RSLTSVFAQE  480
GGSAVFGYEG NCSSDQDLLL LDLPSNGSFP QAELLHQL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4507s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625620.0AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874908.10.0GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLD7M9I00.0D7M9I0_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.7__2553__AT4G17570.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26